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| neuroimagen:fbb [2015/04/29 12:29] – osotolongo | neuroimagen:fbb [2021/03/10 10:24] (current) – [Correccion de movimiento] osotolongo |
|---|
| ====== Problemas con el procesamiento de FBB y como no morir en el intento ====== | ====== Problemas con el procesamiento de FBB y como no morir en el intento ====== |
| |
| ==== de DICOM a NiFTI ==== | ==== bulk conversion ==== |
| Necesitamos convertir los DICOM de FBB a formato NiFTI-1 para trabajar con FSL. El servidor DICOM corta el numero de slices por directorio a 500 por lo que inicialmente hubo muchisimos problemas de conversion y procesamiento. | |
| |
| Luego hay que buscar por todas las subcarpetas del DICOM las imagenes 4x5min que estan desordenadas. Para convertir uno de los sujetos ha de hacerse algo asi, | Voy a escribir un procedimiento nuevo para la conversion de DCM a NIfTI aprovechando que tengo nuevos procedimientos y software para todo. |
| |
| <code bash> | Primero, |
| $ for x in `find /nas/raw_images/facehbi/fbb/FACEHBI-F001B/DICOM/ -type f`; do if [[ `dckey -k "SeriesDescription" $x 2>&1 | grep "4x5min"` ]]; then cp $x /nas/facehbi/tmp_2nifti/; fi; done; y=$(ls /nas/facehbi/tmp_2nifti/ | head -n 1); dcm2nii -o /nas/facehbi/tmp/ /nas/facehbi/tmp_2nifti/$y; | <code> |
| | [osotolongo@detritus facehbi]$ ls /nas/clinic/facehbi |
| | FACEHBI-F001B FACEHBI-F018B FACEHBI-F036B FACEHBI-F055B FACEHBI-F072B FACEHBI-F088B FACEHBI-F105B FACEHBI-F122B FACEHBI-F139B FACEHBI-F155B FACEHBI-F171B FACEHBI-F191B FACEHBI-F208B |
| | FACEHBI-F002B FACEHBI-F019B FACEHBI-F037B FACEHBI-F056B FACEHBI-F073B FACEHBI-F089B FACEHBI-F106B FACEHBI-F123B FACEHBI-F140B FACEHBI-F156B FACEHBI-F173B FACEHBI-F192B FACEHBI-F209B |
| | FACEHBI-F003B FACEHBI-F020B FACEHBI-F038B FACEHBI-F057B FACEHBI-F074B FACEHBI-F090B FACEHBI-F107B FACEHBI-F124B FACEHBI-F141B FACEHBI-F157B FACEHBI-F174B FACEHBI-F193B FACEHBI-F210B |
| | FACEHBI-F004B FACEHBI-F021B FACEHBI-F039B FACEHBI-F058B FACEHBI-F075B FACEHBI-F091B FACEHBI-F108B FACEHBI-F125B FACEHBI-F142B FACEHBI-F158B FACEHBI-F175B FACEHBI-F194B FACEHBI-F211B |
| | FACEHBI-F005B FACEHBI-F022B FACEHBI-F040B FACEHBI-F059B FACEHBI-F076B FACEHBI-F092B FACEHBI-F109B FACEHBI-F126B FACEHBI-F143B FACEHBI-F159B FACEHBI-F177B FACEHBI-F195B FACEHBI-F212B |
| | FACEHBI-F006B FACEHBI-F023B FACEHBI-F041B FACEHBI-F060B FACEHBI-F077B FACEHBI-F093B FACEHBI-F110B FACEHBI-F127B FACEHBI-F144B FACEHBI-F160B FACEHBI-F178B FACEHBI-F196B FACEHBI-F213B |
| | FACEHBI-F007B FACEHBI-F024B FACEHBI-F042B FACEHBI-F061B FACEHBI-F078B FACEHBI-F094B FACEHBI-F111B FACEHBI-F128B FACEHBI-F145B FACEHBI-F161B FACEHBI-F179B FACEHBI-F197B FACEHBI-F214B |
| | FACEHBI-F008B FACEHBI-F025B FACEHBI-F043B FACEHBI-F062B FACEHBI-F079B FACEHBI-F095B FACEHBI-F112B FACEHBI-F129B FACEHBI-F146B FACEHBI-F162B FACEHBI-F181B FACEHBI-F198B FACEHBI-F215B |
| | FACEHBI-F009B FACEHBI-F026B FACEHBI-F044B FACEHBI-F063B FACEHBI-F080B FACEHBI-F096B FACEHBI-F113B FACEHBI-F130B FACEHBI-F147B FACEHBI-F163B FACEHBI-F182B FACEHBI-F199B |
| | FACEHBI-F010B FACEHBI-F027B FACEHBI-F047B FACEHBI-F064B FACEHBI-F081B FACEHBI-F097B FACEHBI-F115B FACEHBI-F131B FACEHBI-F148B FACEHBI-F164B FACEHBI-F183B FACEHBI-F200B |
| | FACEHBI-F011B FACEHBI-F028B FACEHBI-F048B FACEHBI-F065B FACEHBI-F082B FACEHBI-F098B FACEHBI-F116B FACEHBI-F132B FACEHBI-F149B FACEHBI-F165B FACEHBI-F184B FACEHBI-F201B |
| | FACEHBI-F012B FACEHBI-F029B FACEHBI-F049B FACEHBI-F066B FACEHBI-F083B FACEHBI-F099B FACEHBI-F117B FACEHBI-F133B FACEHBI-F150B FACEHBI-F166B FACEHBI-F185B FACEHBI-F202B |
| | FACEHBI-F013B FACEHBI-F030B FACEHBI-F050B FACEHBI-F068B FACEHBI-F084B FACEHBI-F101B FACEHBI-F118B FACEHBI-F134B FACEHBI-F151B FACEHBI-F167B FACEHBI-F186B FACEHBI-F203B |
| | FACEHBI-F014B FACEHBI-F031B FACEHBI-F052B FACEHBI-F069B FACEHBI-F085B FACEHBI-F102B FACEHBI-F119B FACEHBI-F135B FACEHBI-F152B FACEHBI-F168B FACEHBI-F188B FACEHBI-F204B |
| | FACEHBI-F015B FACEHBI-F033B FACEHBI-F053B FACEHBI-F070B FACEHBI-F086B FACEHBI-F103B FACEHBI-F120B FACEHBI-F136B FACEHBI-F153B FACEHBI-F169B FACEHBI-F189B FACEHBI-F205B |
| | FACEHBI-F017B FACEHBI-F035B FACEHBI-F054B FACEHBI-F071B FACEHBI-F087B FACEHBI-F104B FACEHBI-F121B FACEHBI-F137B FACEHBI-F154B FACEHBI-F170B FACEHBI-F190B FACEHBI-F207B |
| | [osotolongo@detritus facehbi]$ dcm2niix -o tmp -z y /nas/clinic/facehbi/FACEHBI-F001B/DICOM/ |
| | Chris Rorden's dcm2niiX version v1.0.20180622 (JP2:OpenJPEG) (JP-LS:CharLS) GCC5.5.0 (64-bit Linux) |
| | Found 620 DICOM file(s) |
| | Convert 109 DICOM as tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5 (400x400x109x1) |
| | compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii" |
| | Convert 75 DICOM as tmp/DICOM_FACEHBI_20141211120511_3 (512x512x75x1) |
| | compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_20141211120511_3.nii" |
| | Convert 436 DICOM as tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4 (400x400x109x4) |
| | compress: "/usr/local/mricron/pigz_mricron" -n -f -6 "tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii" |
| | Conversion required 105.374635 seconds (6.340000 for core code). |
| | [osotolongo@detritus facehbi]$ ls tmp |
| | DICOM_FACEHBI_20141211120511_3.json DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.json DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.json |
| | DICOM_FACEHBI_20141211120511_3.nii.gz DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii.gz DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii.gz |
| | [osotolongo@detritus facehbi]$ for x in tmp/*.nii.gz; do fslinfo ${x}; done |
| | data_type INT16 |
| | dim1 512 |
| | dim2 512 |
| | dim3 75 |
| | dim4 1 |
| | datatype 4 |
| | pixdim1 0.585938 |
| | pixdim2 0.585938 |
| | pixdim3 3.000000 |
| | pixdim4 0.000000 |
| | cal_max 0.0000 |
| | cal_min 0.0000 |
| | file_type NIFTI-1+ |
| | filename tmp/DICOM_FACEHBI_Florbetaben_20min_20141211120511_5.nii.gz |
| | data_type FLOAT32 |
| | dim1 400 |
| | dim2 400 |
| | dim3 109 |
| | dim4 1 |
| | datatype 16 |
| | pixdim1 1.018210 |
| | pixdim2 1.018210 |
| | pixdim3 2.027008 |
| | pixdim4 0.000000 |
| | cal_max 0.0000 |
| | cal_min 0.0000 |
| | file_type NIFTI-1+ |
| | filename tmp/DICOM_FACEHBI_Florbetaben_4x5min_20141211120511_4.nii.gz |
| | data_type FLOAT32 |
| | dim1 400 |
| | dim2 400 |
| | dim3 109 |
| | dim4 4 |
| | datatype 16 |
| | pixdim1 1.018210 |
| | pixdim2 1.018210 |
| | pixdim3 2.027008 |
| | pixdim4 1.000000 |
| | cal_max 0.0000 |
| | cal_min 0.0000 |
| | file_type NIFTI-1+ |
| </code> | </code> |
| |
| que da una salida muy ruidosa, pero funciona. Para hacerlos todos de una tacada habria que iterar esto por todos los sujetos. FIXME | y me hago un scriptcillo para convertir los DCM, escoger el adecuado usando //fslinfo// y hacer un //fslsplit// en el directorio final, |
| |
| ***** Pagina vieja ***** DELETEME | <code perl update_fbb.pl> |
| | #!/usr/bin/perl |
| |
| <code bash> | use strict; |
| $ dcm2nii -o tmp/ /nas/raw_images/facehbi/fbb/FACEHBI-F023B/DICOM/15020608/57070000/57437982 | use warnings; |
| | use NEURO qw(load_study); |
| | use Data::Dump qw(dump); |
| | use File::Find::Rule; |
| | |
| | my $study = "facehbi"; |
| | my %std = load_study($study); |
| | my $src_dir = "/nas/clinic/facehbi"; |
| | my $output_dir = $std{'PET-FBB'}; |
| | my @other_exts = ("nii.gz","json"); |
| | |
| | opendir(my $dh, $src_dir) || die "Can't opendir $src_dir: $!"; |
| | my @adqs = grep {/^[A-Za-z]/} readdir($dh); |
| | closedir $dh; |
| | |
| | foreach my $adq (sort @adqs) { |
| | (my $subject = $adq) =~ s/.*-F(.*)B$/0$1/; |
| | my $order = 'dcm2niix -z y -o '.$std{'DATA'}.'/tmp/ '.$src_dir.'/'.$adq.'/DICOM'; |
| | print "$order\n"; |
| | system($order); |
| | my @conv_files = find(file => 'name' => "*.nii.gz", in => $std{'DATA'}.'/tmp/'); |
| | foreach my $nii_file (@conv_files){ |
| | $order = 'fslinfo '.$nii_file; |
| | my %xinfo; |
| | foreach (qx/$order/){ |
| | my ( $key, $value ) = /(\S+)\s+(\S+)\s*.*/; |
| | $xinfo{$key} =$value; |
| | } |
| | if($xinfo{"dim4"}>1){ |
| | print "Choosing and moving files\n"; |
| | $order = 'fslsplit '.$nii_file.' '.$output_dir.'/smc'.$subject.'s -t'; |
| | print "$order\n"; |
| | system($order); |
| | } |
| | } |
| | print "Cleaning house\n"; |
| | $order = "rm $std{'DATA'}/tmp/*"; |
| | system($order); |
| | } |
| </code> | </code> |
| |
| y podemos tener las sigientes situaciones: | Lo lanzo desde el directorio del proyecto, |
| | <code> |
| | [osotolongo@detritus facehbi]$ ./update_fbb.pl |
| | </code> |
| | y ya esta, los fbb me quedan ordenados correctamente. |
| | ==== de DICOM a NiFTI ==== |
| | DELETEME |
| |
| * Te mandan un DICOM con 4 secuencias de 5 min, apilados correctamente en el tiempo | Necesitamos convertir los DICOM de FBB a formato NiFTI-1 para trabajar con FSL. El servidor DICOM corta el numero de slices por directorio a 500 por lo que inicialmente hubo muchisimos problemas de conversion y procesamiento. |
| | |
| | Luego hay que buscar por todas las subcarpetas del DICOM las imagenes 4x5min que estan desordenadas. Para convertir uno de los sujetos ha de hacerse algo asi, |
| |
| Esto es lo ideal y se convierte facilmente en 4 archivos distintos | |
| <code bash> | <code bash> |
| $ fslsplit s005a2001.nii.gz ../fbb_first/smc0023s -t | $ for x in `find /nas/raw_images/facehbi/fbb/FACEHBI-F001B/DICOM/ -type f`; do if [[ `dckey -k "SeriesDescription" $x 2>&1 | grep "4x5min"` ]]; then cp $x /nas/facehbi/tmp_2nifti/; fi; done; y=$(ls /nas/facehbi/tmp_2nifti/ | head -n 1); dcm2nii -o /nas/facehbi/tmp/ /nas/facehbi/tmp_2nifti/$y; |
| </code> | </code> |
| |
| * La secuencia esta apilada en el eje **Z** | que da una salida muy ruidosa, pero funciona. Para hacerlos todos de una tacada habria que iterar esto por todos los sujetos. |
| Lo peor no es que esten apiladas mal sino que el numero de slices de cada imagen es bastante arbitrario. Hay que abrir la imagen y seleccionarlos manualmente | |
| <code bash> | <code bash> |
| $ ls -lh | for s in `ls -d /nas/clinic/* | grep FACEHBI | grep "B$"`; do sbj=$(echo $s |sed 's/.*-F\(.*\)B$/\1/'); for x in `find ${s}/DICOM/ -type f`; do if [[ `dckey -k "SeriesDescription" $x 2>&1 | grep "4x5min"` ]]; then cp $x /nas/facehbi/tmp_2nifti/; fi; done; y=$(ls /nas/facehbi/tmp_2nifti/ | head -n 1); dcm2nii -o /nas/facehbi/tmp/ /nas/facehbi/tmp_2nifti/$y; conv=$(ls /nas/facehbi/tmp/ | head -n 1); fslsplit /nas/facehbi/tmp/${conv} /nas/facehbi/fbb_first/smc0${sbj}s -t; rm -rf /nas/facehbi/tmp/*; rm -rf /nas/facehbi/tmp_2nifti/*; done |
| total 70M | |
| -rw-rw-r-- 1 osotolongo osotolongo 16M Mar 6 2015 s004a2001.nii.gz | |
| -rw-rw-r-- 1 osotolongo osotolongo 54M Mar 6 2015 s005a2001.nii.gz | |
| $ fslview s005a2001.nii.gz & | |
| $ mkdir splitted; fslsplit s005a2001.nii.gz splitted/s004a -z | |
| $ a=`for i in {0..85}; do printf "splitted/s004a%04d " $i; done`; fslmerge -z ../fbb_first/smc0021s0000 $a | |
| $ a=`for i in {85..185}; do printf "splitted/s004a%04d " $i; done`; fslmerge -z ../fbb_first/smc0021s0001 $a | |
| $ a=`for i in {185..280}; do printf "splitted/s004a%04d " $i; done`; fslmerge -z ../fbb_first/smc0021s0002 $a | |
| $ a=`for i in {280..390}; do printf "splitted/s004a%04d " $i; done`; fslmerge -z ../fbb_first/smc0021s0003 $a | |
| $ rm -rf * | |
| </code> | </code> |
| |
| * Una combinacion de lo anterior | si queremos aprovechar un archivo //yet.txt// ([[neuroimagen:facehbi|ver aqui]]) |
| Esto es lo peor, y creo que lo hacen para joder, pero la solucion es combinar los dos metodos anteriores | |
| |
| | <code bash> |
| | $ for sbj in `awk -F";" '{print $1}' yet.txt | sed 's/0//;'`; do s="/nas/clinic/FACEHBI-F${sbj}B"; for x in `find ${s}/DICOM/ -type f`; do if [[ `dckey -k "SeriesDescription" $x 2>&1 | grep "4x5min"` ]]; then cp $x /nas/facehbi/tmp_2nifti/; fi; done; y=$(ls /nas/facehbi/tmp_2nifti/ | head -n 1); dcm2nii -o /nas/facehbi/tmp/ /nas/facehbi/tmp_2nifti/$y; conv=$(ls /nas/facehbi/tmp/ | head -n 1); fslsplit /nas/facehbi/tmp/${conv} /nas/facehbi/fbb/smc0${sbj}s -t; rm -rf /nas/facehbi/tmp/*; rm -rf /nas/facehbi/tmp_2nifti/*; done |
| | </code> |
| ==== Correccion de movimiento ==== | ==== Correccion de movimiento ==== |
| |
| </code> | </code> |
| ++++ | ++++ |
| 2.- Usando la informacion de un registro para el resto | 2.- Usando la informacion de un registro para el resto (-useg) |
| ++++ fbb_regc| | ++++ fbb_regc| |
| <code bash fbbtemp_regc.sh> | <code bash fbbtemp_regc.sh> |
| </code> | </code> |
| ++++ | ++++ |
| 3.- Usando la informacion solo del cerebro extraido para hacer el corregistro | 3.- Usando la informacion solo del cerebro extraido para hacer el corregistro (-useb) |
| ++++ fbb_regb| | ++++ fbb_regb| |
| <code bash fbbtemp_regb.sh> | <code bash fbbtemp_regb.sh> |
| </code> | </code> |
| ++++ | ++++ |
| 4.- el mas complicado, usando una mascara. Este metodo se probo con el [[neuroimagen:pib_troubles|corregistro de PiBs]] y usa un umbral de intensidad | 4.- el mas complicado, usando una mascara. Este metodo se probo con el [[neuroimagen:pib_troubles|corregistro de PiBs]] y usa un umbral de intensidad (-usem) |
| ++++ fbb_regm| | ++++ fbb_regm| |
| <code bash fbbtemp_regm.sh> | <code bash fbbtemp_regm.sh> |
| </code> | </code> |
| ++++ | ++++ |
| | |
| | ===== Resumiendo ===== |
| | |
| | si todo va bien basta con hacer: |
| | |
| | <code bash> |
| | $ fbb_correct.pl -e facehbi |
| | $ parallel_fbb_rois_metrics.pl facehbi |
| | </code> |
| | |
| | ==== Postprocessing (carrot)==== |
| | <code bash> |
| | $ cd /home/osotolongo/Documents/ACE/facehbi |
| | $ R CMD BATCH selected_mri.r |
| | $ sed 's/"//g' facehbi_mri_selected.csv | awk -F"," '{if($1!="Subject") printf("%04d;%s;%s;%s;%s;%s;%s\n",$1,$2,$3,$4,$5,$6,$7); else printf("%s;%s;%s;%s;%s;%s;%s\n",$1,$2,$3,$4,$5,$6,$7)}' > facehbi_mri_selected_reformatted.csv |
| | $ join -t";" -j 1 facehbi_fbb_fs_suvr_predef.csv facehbi_mri_selected_reformatted.csv > facehbi_fbb_mri.csv |
| | $ join -t";" -j 1 facehbi_fbb_mri.csv facehbi_dti.csv > facehbi_fbb_mri_dti.csv |
| | $ awk 'NR<2{print $0;next}{print $0| "sort -k1"}' demographics.csv | sed 's/, /;/g' > facehbi_demographics.csv |
| | $ join -t";" -j 1 facehbi_demographics.csv facehbi_fbb_mri_dti.csv > facehbi_data.csv |
| | $ sed 's/;/ /g' facehbi_data.csv > facehbi_data.dat |
| | </code> |
| | |
| | ** Note this:** // extract_data | awk 'NR<3{print $0;next}{print $0| "sort -r"}' // ;-) |
| | |
| | <code> |
| | $ head -n 1 facehbi_data.csv | sed 's/;/\n/g' | cat -n |
| | 1 Subject |
| | 2 Gender |
| | 3 Education |
| | 4 Age |
| | 5 FBB |
| | 6 HV |
| | 7 aHV |
| | 8 CMT |
| | 9 aCMT |
| | 10 WMH |
| | 11 nWMH |
| | 12 Unclassified_FA_Mean |
| | 13 Unclassified_FA_STD |
| | 14 Unclassified_MD_Mean |
| | 15 Unclassified_MD_STD |
| | 16 Middle cerebellar peduncle_FA_Mean |
| | 17 Middle cerebellar peduncle_FA_STD |
| | 18 Middle cerebellar peduncle_MD_Mean |
| | 19 Middle cerebellar peduncle_MD_STD |
| | 20 Medial lemniscus L_FA_Mean |
| | 21 Medial lemniscus L_FA_STD |
| | 22 Medial lemniscus L_MD_Mean |
| | 23 Medial lemniscus L_MD_STD |
| | 24 Inferior cerebellar peduncle R _FA_Mean |
| | 25 Inferior cerebellar peduncle R _FA_STD |
| | 26 Inferior cerebellar peduncle R _MD_Mean |
| | 27 Inferior cerebellar peduncle R _MD_STD |
| | 28 Inferior cerebellar peduncle L_FA_Mean |
| | 29 Inferior cerebellar peduncle L_FA_STD |
| | 30 Inferior cerebellar peduncle L_MD_Mean |
| | 31 Inferior cerebellar peduncle L_MD_STD |
| | 32 Superior cerebellar peduncle R_FA_Mean |
| | 33 Superior cerebellar peduncle R_FA_STD |
| | 34 Superior cerebellar peduncle R_MD_Mean |
| | 35 Superior cerebellar peduncle R_MD_STD |
| | 36 Superior cerebellar peduncle L_FA_Mean |
| | 37 Superior cerebellar peduncle L_FA_STD |
| | 38 Superior cerebellar peduncle L_MD_Mean |
| | 39 Superior cerebellar peduncle L_MD_STD |
| | 40 Cerebral peduncle R_FA_Mean |
| | 41 Cerebral peduncle R_FA_STD |
| | 42 Cerebral peduncle R_MD_Mean |
| | 43 Cerebral peduncle R_MD_STD |
| | 44 Cerebral peduncle L_FA_Mean |
| | 45 Cerebral peduncle L_FA_STD |
| | 46 Cerebral peduncle L_MD_Mean |
| | 47 Cerebral peduncle L_MD_STD |
| | 48 Anterior limb of internal capsule R_FA_Mean |
| | 49 Anterior limb of internal capsule R_FA_STD |
| | 50 Anterior limb of internal capsule R_MD_Mean |
| | 51 Anterior limb of internal capsule R_MD_STD |
| | 52 Anterior limb of internal capsule L_FA_Mean |
| | 53 Anterior limb of internal capsule L_FA_STD |
| | 54 Anterior limb of internal capsule L_MD_Mean |
| | 55 Anterior limb of internal capsule L_MD_STD |
| | 56 Posterior limb of internal capsule R_FA_Mean |
| | 57 Posterior limb of internal capsule R_FA_STD |
| | 58 Posterior limb of internal capsule R_MD_Mean |
| | 59 Posterior limb of internal capsule R_MD_STD |
| | 60 Pontine crossing tract (a part of MCP)_FA_Mean |
| | 61 Pontine crossing tract (a part of MCP)_FA_STD |
| | 62 Pontine crossing tract (a part of MCP)_MD_Mean |
| | 63 Pontine crossing tract (a part of MCP)_MD_STD |
| | 64 Posterior limb of internal capsule L_FA_Mean |
| | 65 Posterior limb of internal capsule L_FA_STD |
| | 66 Posterior limb of internal capsule L_MD_Mean |
| | 67 Posterior limb of internal capsule L_MD_STD |
| | 68 Retrolenticular part of internal capsule R_FA_Mean |
| | 69 Retrolenticular part of internal capsule R_FA_STD |
| | 70 Retrolenticular part of internal capsule R_MD_Mean |
| | 71 Retrolenticular part of internal capsule R_MD_STD |
| | 72 Retrolenticular part of internal capsule L_FA_Mean |
| | 73 Retrolenticular part of internal capsule L_FA_STD |
| | 74 Retrolenticular part of internal capsule L_MD_Mean |
| | 75 Retrolenticular part of internal capsule L_MD_STD |
| | 76 Anterior corona radiata R_FA_Mean |
| | 77 Anterior corona radiata R_FA_STD |
| | 78 Anterior corona radiata R_MD_Mean |
| | 79 Anterior corona radiata R_MD_STD |
| | 80 Anterior corona radiata L_FA_Mean |
| | 81 Anterior corona radiata L_FA_STD |
| | 82 Anterior corona radiata L_MD_Mean |
| | 83 Anterior corona radiata L_MD_STD |
| | 84 Superior corona radiata R_FA_Mean |
| | 85 Superior corona radiata R_FA_STD |
| | 86 Superior corona radiata R_MD_Mean |
| | 87 Superior corona radiata R_MD_STD |
| | 88 Superior corona radiata L_FA_Mean |
| | 89 Superior corona radiata L_FA_STD |
| | 90 Superior corona radiata L_MD_Mean |
| | 91 Superior corona radiata L_MD_STD |
| | 92 Posterior corona radiata R_FA_Mean |
| | 93 Posterior corona radiata R_FA_STD |
| | 94 Posterior corona radiata R_MD_Mean |
| | 95 Posterior corona radiata R_MD_STD |
| | 96 Posterior corona radiata L_FA_Mean |
| | 97 Posterior corona radiata L_FA_STD |
| | 98 Posterior corona radiata L_MD_Mean |
| | 99 Posterior corona radiata L_MD_STD |
| | 100 Posterior thalamic radiation (include optic radiation) R_FA_Mean |
| | 101 Posterior thalamic radiation (include optic radiation) R_FA_STD |
| | 102 Posterior thalamic radiation (include optic radiation) R_MD_Mean |
| | 103 Posterior thalamic radiation (include optic radiation) R_MD_STD |
| | 104 Genu of corpus callosum_FA_Mean |
| | 105 Genu of corpus callosum_FA_STD |
| | 106 Genu of corpus callosum_MD_Mean |
| | 107 Genu of corpus callosum_MD_STD |
| | 108 Posterior thalamic radiation (include optic radiation) L_FA_Mean |
| | 109 Posterior thalamic radiation (include optic radiation) L_FA_STD |
| | 110 Posterior thalamic radiation (include optic radiation) L_MD_Mean |
| | 111 Posterior thalamic radiation (include optic radiation) L_MD_STD |
| | 112 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_FA_Mean |
| | 113 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_FA_STD |
| | 114 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_MD_Mean |
| | 115 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) R_MD_STD |
| | 116 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_FA_Mean |
| | 117 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_FA_STD |
| | 118 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_MD_Mean |
| | 119 Sagittal stratum (include inferior longitidinal fasciculus and inferior fronto-occipital fasciculus) L_MD_STD |
| | 120 External capsule R_FA_Mean |
| | 121 External capsule R_FA_STD |
| | 122 External capsule R_MD_Mean |
| | 123 External capsule R_MD_STD |
| | 124 External capsule L_FA_Mean |
| | 125 External capsule L_FA_STD |
| | 126 External capsule L_MD_Mean |
| | 127 External capsule L_MD_STD |
| | 128 Cingulum (cingulate gyrus) R_FA_Mean |
| | 129 Cingulum (cingulate gyrus) R_FA_STD |
| | 130 Cingulum (cingulate gyrus) R_MD_Mean |
| | 131 Cingulum (cingulate gyrus) R_MD_STD |
| | 132 Cingulum (cingulate gyrus) L_FA_Mean |
| | 133 Cingulum (cingulate gyrus) L_FA_STD |
| | 134 Cingulum (cingulate gyrus) L_MD_Mean |
| | 135 Cingulum (cingulate gyrus) L_MD_STD |
| | 136 Cingulum (hippocampus) R_FA_Mean |
| | 137 Cingulum (hippocampus) R_FA_STD |
| | 138 Cingulum (hippocampus) R_MD_Mean |
| | 139 Cingulum (hippocampus) R_MD_STD |
| | 140 Cingulum (hippocampus) L_FA_Mean |
| | 141 Cingulum (hippocampus) L_FA_STD |
| | 142 Cingulum (hippocampus) L_MD_Mean |
| | 143 Cingulum (hippocampus) L_MD_STD |
| | 144 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_FA_Mean |
| | 145 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_FA_STD |
| | 146 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_MD_Mean |
| | 147 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) R_MD_STD |
| | 148 Body of corpus callosum_FA_Mean |
| | 149 Body of corpus callosum_FA_STD |
| | 150 Body of corpus callosum_MD_Mean |
| | 151 Body of corpus callosum_MD_STD |
| | 152 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_FA_Mean |
| | 153 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_FA_STD |
| | 154 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_MD_Mean |
| | 155 Fornix (cres) / Stria terminalis (can not be resolved with current resolution) L_MD_STD |
| | 156 Superior longitudinal fasciculus R_FA_Mean |
| | 157 Superior longitudinal fasciculus R_FA_STD |
| | 158 Superior longitudinal fasciculus R_MD_Mean |
| | 159 Superior longitudinal fasciculus R_MD_STD |
| | 160 Superior longitudinal fasciculus L_FA_Mean |
| | 161 Superior longitudinal fasciculus L_FA_STD |
| | 162 Superior longitudinal fasciculus L_MD_Mean |
| | 163 Superior longitudinal fasciculus L_MD_STD |
| | 164 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_FA_Mean |
| | 165 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_FA_STD |
| | 166 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_MD_Mean |
| | 167 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) R_MD_STD |
| | 168 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_FA_Mean |
| | 169 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_FA_STD |
| | 170 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_MD_Mean |
| | 171 Superior fronto-occipital fasciculus (could be a part of anterior internal capsule) L_MD_STD |
| | 172 Uncinate fasciculus R_FA_Mean |
| | 173 Uncinate fasciculus R_FA_STD |
| | 174 Uncinate fasciculus R_MD_Mean |
| | 175 Uncinate fasciculus R_MD_STD |
| | 176 Uncinate fasciculus L_FA_Mean |
| | 177 Uncinate fasciculus L_FA_STD |
| | 178 Uncinate fasciculus L_MD_Mean |
| | 179 Uncinate fasciculus L_MD_STD |
| | 180 Tapetum R_FA_Mean |
| | 181 Tapetum R_FA_STD |
| | 182 Tapetum R_MD_Mean |
| | 183 Tapetum R_MD_STD |
| | 184 Tapetum L_FA_Mean |
| | 185 Tapetum L_FA_STD |
| | 186 Tapetum L_MD_Mean |
| | 187 Tapetum L_MD_STD |
| | 188 Splenium of corpus callosum_FA_Mean |
| | 189 Splenium of corpus callosum_FA_STD |
| | 190 Splenium of corpus callosum_MD_Mean |
| | 191 Splenium of corpus callosum_MD_STD |
| | 192 Fornix (column and body of fornix)_FA_Mean |
| | 193 Fornix (column and body of fornix)_FA_STD |
| | 194 Fornix (column and body of fornix)_MD_Mean |
| | 195 Fornix (column and body of fornix)_MD_STD |
| | 196 Corticospinal tract R_FA_Mean |
| | 197 Corticospinal tract R_FA_STD |
| | 198 Corticospinal tract R_MD_Mean |
| | 199 Corticospinal tract R_MD_STD |
| | 200 Corticospinal tract L_FA_Mean |
| | 201 Corticospinal tract L_FA_STD |
| | 202 Corticospinal tract L_MD_Mean |
| | 203 Corticospinal tract L_MD_STD |
| | 204 Medial lemniscus R_FA_Mean |
| | 205 Medial lemniscus R_FA_STD |
| | 206 Medial lemniscus R_MD_Mean |
| | 207 Medial lemniscus R_MD_STD |
| | 208 Anterior thalamic radiation L_FA_Mean |
| | 209 Anterior thalamic radiation L_FA_STD |
| | 210 Anterior thalamic radiation L_MD_Mean |
| | 211 Anterior thalamic radiation L_MD_STD |
| | 212 Forceps minor_FA_Mean |
| | 213 Forceps minor_FA_STD |
| | 214 Forceps minor_MD_Mean |
| | 215 Forceps minor_MD_STD |
| | 216 Inferior fronto-occipital fasciculus L_FA_Mean |
| | 217 Inferior fronto-occipital fasciculus L_FA_STD |
| | 218 Inferior fronto-occipital fasciculus L_MD_Mean |
| | 219 Inferior fronto-occipital fasciculus L_MD_STD |
| | 220 Inferior fronto-occipital fasciculus R_FA_Mean |
| | 221 Inferior fronto-occipital fasciculus R_FA_STD |
| | 222 Inferior fronto-occipital fasciculus R_MD_Mean |
| | 223 Inferior fronto-occipital fasciculus R_MD_STD |
| | 224 Inferior longitudinal fasciculus L_FA_Mean |
| | 225 Inferior longitudinal fasciculus L_FA_STD |
| | 226 Inferior longitudinal fasciculus L_MD_Mean |
| | 227 Inferior longitudinal fasciculus L_MD_STD |
| | 228 Inferior longitudinal fasciculus R_FA_Mean |
| | 229 Inferior longitudinal fasciculus R_FA_STD |
| | 230 Inferior longitudinal fasciculus R_MD_Mean |
| | 231 Inferior longitudinal fasciculus R_MD_STD |
| | 232 Superior longitudinal fasciculus L_FA_Mean |
| | 233 Superior longitudinal fasciculus L_FA_STD |
| | 234 Superior longitudinal fasciculus L_MD_Mean |
| | 235 Superior longitudinal fasciculus L_MD_STD |
| | 236 Superior longitudinal fasciculus R_FA_Mean |
| | 237 Superior longitudinal fasciculus R_FA_STD |
| | 238 Superior longitudinal fasciculus R_MD_Mean |
| | 239 Superior longitudinal fasciculus R_MD_STD |
| | 240 Uncinate fasciculus L_FA_Mean |
| | 241 Uncinate fasciculus L_FA_STD |
| | 242 Uncinate fasciculus L_MD_Mean |
| | 243 Uncinate fasciculus L_MD_STD |
| | 244 Uncinate fasciculus R_FA_Mean |
| | 245 Uncinate fasciculus R_FA_STD |
| | 246 Uncinate fasciculus R_MD_Mean |
| | 247 Uncinate fasciculus R_MD_STD |
| | 248 Superior longitudinal fasciculus (temporal part) L_FA_Mean |
| | 249 Superior longitudinal fasciculus (temporal part) L_FA_STD |
| | 250 Superior longitudinal fasciculus (temporal part) L_MD_Mean |
| | 251 Superior longitudinal fasciculus (temporal part) L_MD_STD |
| | 252 Anterior thalamic radiation R_FA_Mean |
| | 253 Anterior thalamic radiation R_FA_STD |
| | 254 Anterior thalamic radiation R_MD_Mean |
| | 255 Anterior thalamic radiation R_MD_STD |
| | 256 Superior longitudinal fasciculus (temporal part) R_FA_Mean |
| | 257 Superior longitudinal fasciculus (temporal part) R_FA_STD |
| | 258 Superior longitudinal fasciculus (temporal part) R_MD_Mean |
| | 259 Superior longitudinal fasciculus (temporal part) R_MD_STD |
| | 260 Corticospinal tract L_FA_Mean |
| | 261 Corticospinal tract L_FA_STD |
| | 262 Corticospinal tract L_MD_Mean |
| | 263 Corticospinal tract L_MD_STD |
| | 264 Corticospinal tract R_FA_Mean |
| | 265 Corticospinal tract R_FA_STD |
| | 266 Corticospinal tract R_MD_Mean |
| | 267 Corticospinal tract R_MD_STD |
| | 268 Cingulum (cingulate gyrus) L_FA_Mean |
| | 269 Cingulum (cingulate gyrus) L_FA_STD |
| | 270 Cingulum (cingulate gyrus) L_MD_Mean |
| | 271 Cingulum (cingulate gyrus) L_MD_STD |
| | 272 Cingulum (cingulate gyrus) R_FA_Mean |
| | 273 Cingulum (cingulate gyrus) R_FA_STD |
| | 274 Cingulum (cingulate gyrus) R_MD_Mean |
| | 275 Cingulum (cingulate gyrus) R_MD_STD |
| | 276 Cingulum (hippocampus) L_FA_Mean |
| | 277 Cingulum (hippocampus) L_FA_STD |
| | 278 Cingulum (hippocampus) L_MD_Mean |
| | 279 Cingulum (hippocampus) L_MD_STD |
| | 280 Cingulum (hippocampus) R_FA_Mean |
| | 281 Cingulum (hippocampus) R_FA_STD |
| | 282 Cingulum (hippocampus) R_MD_Mean |
| | 283 Cingulum (hippocampus) R_MD_STD |
| | 284 Forceps major_FA_Mean |
| | 285 Forceps major_FA_STD |
| | 286 Forceps major_MD_Mean |
| | 287 Forceps major_MD_STD |
| | </code> |
| | |
| | ===== Correccion de movimiento ===== |
| | |
| | {{ :neuroimagen:new_movement_correction_comparison.png?600 |}} |
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| | |
